Arnaud CEOL 3 1 te r, ave n ue Voltaire 0 2 2 00 Soiss o n s FRANCE t el: + 3 9 3 29 3 4 8 2 16 6 e m ail:

a r n a u d.ceol@uniro m a 2.it Fre nc h 2 8, si ngle

Education Uni v erst y of Rom e Tor Vergata 2 00 5 - 2 00 7 PhD stud e nt, Molecular a n d Cellular Biology Uni v ersité d e s Scien ce s et Techn ol ogie s d e Lille 2 00 1 - 2 00 2 De s s Bioinformatic s , wit h h o n o u r s Maîtris e Informatique , eq uivalen t t o a Mas ter's Degree in co m p u t e r scie nce, wit h 2 00 0 - 2 00 1 honours Licenc e Informatiqu e, eq uivale n t t o a Bachelor's Degree in co m p u t e r science, 1 99 9 - 2 00 0 wit h h o n o u r s 1 99 6 - 1 99 8 Deug Sciences d e la Matière, s eco n d year u niver sity di plo m a Physics / C he mi s t ry Lycé e Gérard d e Ner val, Sois s o n s 1 99 5 - 1 99 6 Baccala u réa t sé rie S, e q uivale n t t o 'A' level (Mat he m a tics, Physics a n d Che mis t ry)

Skills and Kno wl e dg e program ming language s: Java, C, Ada, Perl, Prolog, PHP, PL /SQL, Map ple Comput er databas e s: Oracle, d evelo pe r 2 0 0 0, Pos tgre s, MySQL, m a p pi ng wit h OJB et Scienc e Cas to r o p erating s y s t e m s: Linux /UNIX, Wind ow s n et w ork: a p plet s, s e rvlet s, JSP, Java Bean s, RMI, HTML, XML, CGI, javascri p t s mi s c: Str u t s, OJB, Hiber n a t e, To mca t Bioinformati bioinf ormatic s: s e q ue nce a n alysis, d a t a m i ni ng, s t a tis tics s o ft ware: Blas t, Fas ta, Clus tal, Dialign c s and biolog y: gene tics, t r a n scri p t o mics, p r o te o mics, p hyloge ny, bioc he mis t ry, biolog y cellular biology

Profe s si onal background Soft ware d e v el op m e nt and databas e managing 2 00 3 - 2 00 6 Univer sity of Ro m e “Tor Verga ta” Prof. G. Cesa re ni's Molecular Gene tics Gro u p: • MINT: a Data ba s e of Molecular Inter action s

h t t p: / / m i n t.bio.u niro m a 2.it / mi n t / •

d o min o: d o m ai n - p e p ti de inter actio n d a t a ba s e

h t t p: / / m i n t.bio.u niro m a 2.it / d o mi n o XML mak er / flatten er: a t o ol t o t ra n sfo r m flat files int o XML PSI files a n d XML PSI files into flat files h t t p: / / p si dev.cvs.s o u rceforge.ne t / p si dev / p si / m i / t o ols / Involve d in PSI (Protei n Stan d a r d Initiative h t t p: / / p si dev.so u rceforge.net / ) a n d IMEx (Inter na tio nal Molecular Excha nge Con s or tiu m, h t t p: / / i m ex.so u rceforge.net / ) •

Training Sche m e s in Bioinformatic s May Euro pea n Bioinfor m a tics Ins tit u t e (Ca m bri dge, UK) October Swi s sWatch: a d d feat u re s t o s oftwa re for web se rvices m o nit o ri ng (Java, 2 00 2 To mca t, h t ml, Javascri p t s, s e rvlet) 6 m o nt h Intact: write a sy nc h r o ni z a tio n t ool allowing excha ngi ng d a t a e n t ries be twee n t he local d a t a b a s e s (Java, Cas t o r, OJB, Oracle, Postgre s, cvs) March - April Paste u r Ins tit u te of Lille (France) 2 00 2 write a web inte rface for p hyloge nics s oftware (Pu z zle, MrBayes...). 2 w ee ks Training Sche m e s in Computer Scienc e sum mer TUBEST (Fère e n Tar de n ois, Fra nce) 2 00 0 d evelo p m e n t of s of twa re for d oc u m e n t flow m a n age m e n t wit h Lot u s 1 1 w ee ks NOTES /DOMINO. Sum m er Sum m er Jobs Jobs 2 00 1 Te m p o r a ry e m ploy m e n t (agency LOCAMET, Lille, Fra nce): creatio n of a d a t a b a s e 1 0 w ee ks (FileMaker) for a n a r t gallery, recovery of m ac ro s wit h Micros oft Excel a n d Adobe Phot o s h o p (Leroy Merlin), work s o n Micros oft Excel a n d Fro ntPage (Decat hlo n) 1 99 4 - 1 99 8 TUBEST: work in t he d elivery a d mi nis t ra tio n d e p a r t m e n t 1 m o nt h

Additional Information Foreign Frenc h: n a tive s pe a ke r languag e s Englis h : flue n t (TOEFL, t r aining p e rio d of six m o n t h in Engla n d). Italian: flue n t Ger m a n : worki ng k n owle dge Acti vitie s s p o r t : h a n d - b all (Sois s o n s u n til 19 9 7, region al level) m u sic: clas sic guitar (Nation al Con s erva t ory, Sois so n s) electric: (me m b er of a r ock b a n d) Ass ociatio n s : p r e si de n t (Tatab ox 2 0 0 1 - 20 0 2) a n d s ecret a ry (Struct u re Manage m e n t)

Lecture s SYMBIONIC c o urs e 2 0 0 4 o n Computational Syst e m s Biolog y of the Neuronal Cell 6 - 1 0 Dece m b er 2 0 0 4, SISSA - ICTP, Tries te, Italy

Publication s *: t he first t wo a ut hors should be regarded as joint First A u t hors

Arnaud Ceol*, An d rew Chat r - a rya m o n t ri*, Elena Sant o nico, Rober t o Sacco, Luisa Cas t ag noli a n d Gian ni Cesare ni DOMINO: a databas e of d o main–peptide interaction s Nucleic Acids Research 2006; doi: 10.1093/nar/gkl961

And r ew Cha t r - a rya m o n t ri*, Arnaud Ceol*, Luisa Montecc hi Pala z zi, Giulia no Nar delli, Maria Victoria Sch nei der, Luisa Cas tag n oli a n d Gian ni Ces are ni MINT: the Molecular INTeraction databas e Nucleic Acids Research 2006; doi: 10.1093/nar/gkl961

Persico M, Ceol A , Gavrila C, Hoff m a n n R, Florio A, Cesare ni G. Hom oMINT: an inferred hu man n et w ork bas e d o n ortholog y mapping of protein interaction s di s c o v ered in m o d el organis m s. BMC Bioinfor m a tics. 2 0 0 5 Dec 1;6 Sup pl 4:S21.

Cesare ni G, Ceol A , Gavrila C, Pala z zi LM, Persico M, Sch nei de r MV. Comparati v e interacto mic s. FEBS Lett. 20 0 5 Mar 2 1;579(8):1828 - 33. Review. Her mj ako b H, Montecc hi - Pala z zi L, Bader G, Wojcik J, Salwins ki L, Ceol A , Moore S, Orc ha r d S, Sarka n s U, von Mering C, Roecher t B, Poux S, Jung E, Mersc h H, Kersey P, Lap pe M, Li Y, Zeng R, Rana D, Nikols ki M, Husi H, Brun C, Sha nker K, Gra n t SG, San der C, Bork P, Zhu W, Pan dey A, Bra z m a A, Jacq B, Vidal M, Sher m a n D, Legrai n P, Cesa re ni G, Xenarios I, Eise nbe rg D, Steipe B, Hogue C, Apweiler R. The HUPO PSI's m ol ecular interaction format - - a c o m m u nit y standard for the repre s e ntation of protein interaction data. Nat Biotec h n ol. 2 00 4 Feb;22(2):177 - 83.