General overview of the research work - Fabien Lombard .fr

Experimental study and modelling the foraminifers ecophysiology. Laboratoire des Sciences du Climat et de l'Environnement. (LSCE, Gif sur Yvette, France).
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Curriculum Vitae Fabien Lombard Born in France the 13 December 1979 French Nationality Address: National Institute for Aquatic Resources Oceanography Section Technical University of Denmark Kavalergården 6 DK-2920 Charlottenlund Denmark +33 (0)6 77 10 72 42 +45 29 71 12 79

[email protected]

Post-Dostoral position in DTUAqua (Denmark) Dr in Biological Oceanography and Marine environment (Paris VI University) PhD Thesis in the LOV (Laboratoire d'Océanographie de Villefranche-sur-mer)

 http://fabien.lombard1.free.fr

WORK/ RESEARCH EXPERIENCE June 2008-…: Post doctoral position. Marie Curie Fellowship. “Houses Fate”: Appendicularian houses fate and role in carbon sedimentation and nutrition of zooplankton. Danish Technical University (DTU Aqua, Charlottenlund, Danemark). Adviser : Pr. Thomas Kiørboe. April 2006-May 2008: Post doctoral position. Experimental study and modelling the foraminifers ecophysiology. Laboratoire des Sciences du Climat et de l’Environnement (LSCE, Gif sur Yvette, France). Advisers : Pr. Laurent Labeyrie and Dr. Elisabeth Michel. October 2002- January 2006: Ph.D. "Experimental and modelling study of the ecophysiology of the appendicularian Oikopleura dioica" Laboratoire d'Océanographie de Villefranche sur mer (University Pierre et Marie Curie, Paris VI, France). CNRS UMR 7093. France. Advisers: Dr. Gabriel Gorsky and Dr. Antoine Sciandra. February -June 2002: Intern LOV (Laboratoire d'Océanographie de Villefranche sur mer, University Pierre et Marie Curie, Paris VI, France) Master training course (5 month) “Relationships between the zooplankton community, the hydrodynamism and environmental indicators. Spatial and temporal mesoscale variations in the North-East Atlantic Ocean (POMME campaigns)”. Directors: Andersen Valérie and Ibanez Frédéric (LOV). July-August 2001: Voluntary training course (LOV, Laboratoire d'Océanographie de Villefranche sur mer) on the Zooscan project (automatic system of numerical image acquisition and recognition of zooplankton). Director: Gabriel Gorsky.

April-May 2001: Intern (LOV, Laboratoire d'Océanographie de Villefranche sur mer), Master first year training course. “Study of macroplanktonic species temporal successions: temporal series of the point B of the Villefranche bay from 1995 to 1999”. Under the direction of Frederic Ibanez. April-May 2000: Voluntary training course at the laboratory of Lille 1 University: “Study of the temperature influence on the growth of Nereis diversicolor. Harvest of juveniles in bay of Authie, cultures of juveniles, extraction and determination of the associated benthic meiofaune. Under the direction of Patrick Scaps. EDUCATION 2002-2006: PhD in Oceanography: Laboratoire d'Océanographie de Villefranche sur mer (University Pierre et Marie Curie, Paris VI, France) 2001-2002: Diplome d'Etudes Approfondies (Master equivalent) in Biological Oceanology and Marine Environment (with honors) University Pierre et Marie Curie, Paris VI, France Specialization in marine ecosystem modelling and data analysis 2000-2001: Maîtrise (first year of Master equivalent) in Biology of Ecosystems and Populations (with honors) University of LILLE 1 (France) Specialization in Oceanology 1999-2000: B.S. in Organisms Biology (with honors) University of LILLE 1 (France) Specialization in Oceanology 1997-1999: DEUG B (two first year of biology bachelor equivalent) University of Burgundy, Dijon, France. With honors 1996-1997: Baccalauréat (High School Diploma) Specialization in Biology OTHER Teaching experience: -Supervising and helping Renaud F. (Marseille master trainee), subject : “Study of size variation, filtration and assimilation of Oikopleura dioica in relation to food concentration”. -Supervising and helping Saintsbury C. (Manchester BSc trainee), subject : “Ecophysiology and population dynamics of North Western Mediterranean Appendicularians” -Supervising and helping Eloire D. (Paris master trainee), subject : “Study of interactions between appendicularians and ciliates: Growth and development of Oikopleura dioica under the presence of ciliates” -Supervising and helping Gobet A. (Paris master trainee), subject : “Study of interactions between appendicularians and ciliates: Influence of appendicularians on ciliates population” -Course dispensed to the MASTER of Sciences and Technologies of the UPMC Specialization: Biological Oceanology and Marine Environment (marine ecosystem modelling course). December 2004. “Ecophysiology, growth and reproduction of appendicularians: a dynamic energy budget model.” -Course dispensed to the Liege European DEA (Diplôme d'Etudes Approfondies- master equivalent) in Marine Environment Modelling, February 2004. “Studying and modelling predator-prey interactions of the appendicularian Oikopleura dioica and algae in controlled conditions.” -Scuba diving licence (two stars CMAS) -Driving licence (French)

RELEVANT SCIENTIFIC TECHNIQUES ACQUIRED & GENERAL SKILLS Biology/Ecology: Measure of filtration, assimilation ingestion and breathing rates of zooplankton, measure of growth and reproduction, cultures of algae, experiments on chemostat, breeding of zooplankton and ciliates. Systematic: Identification of most plankton organisms to species level (except copepods), and some meiobenthos organisms General laboratory techniques: microscopy size analysis, microscopy dissection, filtration, freeze-drying, centrifugation, use of autoanalyser CHN and marine particles counters (HIAC and Coulter Counter multisizer) plankton sampling (plankton nets, Niskin bottles), image and video treatment and analyses. Use of oxygen electrodes or microelectrods. Field study: Organising and participation (plankton net, CTD and Chlorophyll sampling) in a multidisciplinary campaign in the Bay of Biscay. Participation to a campaign dedicated to the production of a vulgarisation film on the Mediterranean Sea. Programming: Programming of models and data analysis programs in MATLAB language, rudiment under turbo-Pascal. Can easily understand and use new software or informatics languages. Data analysis: Programming and use of parametric or non-parametric analyses, multivariate methods, hierarchic classifications, temporal and spatial analyses. Use and analyse of data from MODIS ans SeaWiFS satellites. Computer skills: Papers and technical reports writing (Word & Excel, End Note, rudiment of LaTeX), image treatment and analyses (Photoshop 6, Image J, Adobe Premiere, MatLab), oral communication preparation (Power Point). Languages: French and English (spoken read and written); German (read) Scuba diving: 2nd level CMAS. Underwater photography, French Driving Licence B Research results

Publications 1. Lombard F, Sciandra A, Gorsky G, 2005. Influence of body mass, food concentration, temperature and filtering activity on the oxygen uptake of the appendicularian Oikopleura dioica. Marine Ecology Progress Series, 301: 149-158. 2. Stemmann L, Youngbluth M, Robert K, Hosia A, Picheral M, Paterson H, Ibanez F, Guidi L, Lombard F and Gorsky G, 2008. Global zoogeography of fragile macrozooplankton in the upper 100-1000 m depth inferred from the Underwater Video Profiler. ICES J. Mar. Sci. 65: 433-442. 3. Lombard F, Renaud F, Sainsbury C, Sciandra A, Gorsky G, 2009. Appendicularians ecophysiology. I. Food concentration dependent clearance rate, assimilation efficiency, growth, maturation and reproduction of Oikopleura dioica (in press, Journal of Marine Systems). doi:10.1016/j.jmarsys.2009.01.004 4. Lombard F, Sciandra A, Gorsky G. Appendicularians ecophysiology, 2009. II. Reproducing clearance, growth, respiration and particles production of the appendicularian Oikopleura dioica by modeling its ecophysiology (in press, Journal of Marine Systems). doi:10.1016/j.jmarsys.2009.01.005 5. Lombard F, Erez J, Michel E, Labeyrie L, 2009. Temperature effect on respiration and photosynthesis rates of the symbiont-bearing foraminifers Globigerinoides ruber, Orbulina universa and Globigerinella siphonifera. Limnology and Oceanography, 54: 210-218 6. Lombard F, Labeyrie L, Lea D, Spero H, Michel E, 2009. Modelling the temperature dependent growth rates of planktic foraminifera. Marine Micropaleontology, 70:1-8

7. Schmidt S, Howa H, Mouret A, Lombard F, Anschutz P, and Labeyrie L. 2009. Particle fluxes and recent sediment accumulation on the Aquitanian margin of Bay of Biscay. Continental Shelf Research, 29: 1044-1052 8. S. Retailleau, H. Howa, R. Schiebel, F. Lombard, F. Eynaud, S. Schmidt, F. Jorissen, L. Labeyrie. 2009. Planktic foraminiferal production along an offshore-onshore transect in the south-eastern Bay of Biscay. Continental Shelf Research, 29: 1123-1135 9. Lombard F, Legendre L, Picheral M, Sciandra A, Gorsky G. Prediction of ecological niches and carbon export by appendicularians using a new multispecies ecophysiological model. (Marine Ecology Progress Series, accepted). 10. Lombard F, Eloire D, Gobet A, Stemmann L, Dolan J, Gorsky G. Experimental and modeling evidence of ciliates-appendicularians interactions (Limnology and Oceanography, accepted).

ORAL COMMUNICATIONS Lombard F, Labeyrie L, Michel E, Lea D and member of he Forclim team. The FORCLIM eco-physiological growth model for planktic foraminifera: a new tool to reconstruct ecological niches, abundances and potential depth and season of growth for fossil foraminifera species in ocean sediment records. AGU (American Geophysical Union) Fall Meeting, San Francisco (Etats-Unis) 10-14 Décembre 2007. (Communication orale) Lombard F, Erez J, Michel E, Labeyrie L (2007) Multispecies modeling approach to predict foraminifer growth and ecological niches. 4th International zooplankton production symposium, Hiroshima (Japan), May 28-June 1. Lombard F (2007) Modeling the ecophysiology of the appendicularian Oikopleura dioica, SESAME WP5 meeting, Madrid (Spain) may 8-10 2007 (Invited Oral presentation). Lombard F (2007) How physiology can explain foraminifers biogeography: a coupled experimental and modelling approach. Intern seminar, Tubingen (Germany) January 24 (Invited Oral presentation). Lombard F, Eloire D, Gobet A, Stemmann L, Dolan J, Gorsky G. (2006) Experimental and modeling evidence of ciliates-appendicularians interactions. Mathematical Biosciences Institute meeting, Columbus (USA), May 15-19 2006 (Invited presentation, Oral and poster). Lombard F (2005) Ecophysiologic appendicularian model : application to the POMME campaign. LOV Internal seminar, November 18, 2005. Lombard F, Renaud F, Sainsbury C, Sciandra A, Gorsky G (2005) Dynamic energy budget in Oikopleura dioica (Appendicularia). ASLO Summer meeting, Santiago de Compostella (Spain), June 19-24, 2005. Lombard F (2005) Ecophysiology, growth and reproduction of appendicularians: a dynamic energy budget model. LOV Internal seminar, January 20, 2005. Lombard F (2004) Ecophysiology, growth and reproduction of appendicularians: an experimental and modelling approach. Forum of the Young Oceanographers. LOV, May 1314, 2004.

POSTERS 1- Lombard F, Erez J, Michel E, Labeyrie L (2007) Multispecies modeling approach to predict foraminifer growth and ecological niches. Foraminifera and nannofossil groups joint spring meeting, June 7-8, Angers (France). 2- Lombard F, Picheral M, Sciandra A, Legendre L, Gorsky G (2007). Multispecies modeling approach to predict ecological niches and carbon export by appendicularians. 4th International zooplankton production symposium, Hiroshima (Japan), May 28-June 1. 3- Lombard F, Eloire D, Gobet A, Stemmann L, Dolan J, Gorsky G. (2006) Experimental and modeling evidence of ciliates-appendicularians interactions. Mathematical Biosciences Institute meeting, Columbus (USA), May 15-19 2006 (Invited presentation, Oral and poster). 4- Lombard F, Sainsbury C, Renaud F, Sciandra A and Gorsky G (2004) Estimation of appendicularians environmental impact by modelling ecophysiology, growth and reproduction. ASLO Summer meeting, Sahvannah, June 13-18, 2004. 5- Lombard F, Sainsbury C, Sciandra A and Gorsky G (2003) Modelling Oikopleura dioica (appendicularian) physiology and life cycle. LOV Internal seminar, December 10, 2003.