Processing NHP aMRIs for VBM

Processing NHP aMRIs for VBM... Sylvain Takerkart. RMN – Feb 14, 2013 ... -o anatpnh_nikos05_anat04_roi.nii -x 10 -X 142 -y. 20 -Y 120 -z 14 -Z 193 ...
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Processing NHP aMRIs for VBM... Sylvain Takerkart

RMN – Feb 14, 2013

the raw image

zoomed in (cropped)

AimsSubVolume -i anatpnh_nikos05_anat04.nii -o anatpnh_nikos05_anat04_roi.nii -x 10 -X 142 -y 20 -Y 120 -z 14 -Z 193

unsphinxed

AimsFlip -i anatpnh_nikos05_anat04_roi.nii -o anatpnh_nikos05_anat04_roi_flip.nii -m YZ

brain extraction

using BET2 (FSL)

the rhesus macaque atlas

http://brainmap.wisc.edu/monkey.html

registration

using Flirt (FSL), 6 dof

segmentation

using SPM segment and the prior probability maps from the macaque atlas

run VBM...