Mobyle @ RPBS A web portal for structural bioinformatics and chemoinformatics. Julien Maupetit1 , Bertrand Néron2 , Hervé Ménager2 , Corinne Maufrais2 , Nicolas Joly2 , Catherine Letondal2 , Pierre Tufféry1 . 1 RPBS Université Paris Diderot Paris 7 Bâtiment Lamarck 36, rue Hélène Brion 75013 Paris, France
2 Groupe Lociciels et banques de données Institut Pasteur 28, Rue du Docteur Roux 75724 PARIS Cedex, Fance
2008/11/06
What’s next ?
Introduction
Mobyle project
RPBS Mobyle portal
What’s next ?
Mobyle project
What is Mobyle ? a new scientific analysis web portal provides an access to command line tools via a web interface emphasis on : usability for users, extensibility for developers, maintainability for server administrators.
Introduction
Mobyle project
Outline
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Mobyle project
RPBS Mobyle portal
What’s next ?
Introduction
Mobyle project
Outline
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Mobyle project
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RPBS Mobyle portal
RPBS Mobyle portal
What’s next ?
Introduction
Mobyle project
Outline
1
Mobyle project
2
RPBS Mobyle portal
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What’s next ?
RPBS Mobyle portal
What’s next ?
Introduction
Mobyle project
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Mobyle project Motivation Participative design Functionalities Architecture overview XML program description XML program description Quick tour : workspace Quick tour : form submission Quick tour : results In test : the "grid" mode
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RPBS Mobyle portal
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What’s next ?
RPBS Mobyle portal
What’s next ?
Introduction
Mobyle project
RPBS Mobyle portal
What’s next ?
Motivation Key problem ease the acces to bio/chemo-informatics tools, for scientists. bioinformatics tools are often command-line tools command line-tools → steep learning curve providing a web interface, which biologists are more familiar with developing custom cgis is both a time consuming and error-prone approach. Based on former projects → PISE system (1999, C. Letondal) and P-Serveur (2004, P. Tufféry et al.)
Introduction
Mobyle project
RPBS Mobyle portal
Participative design
User interviews, participatory workshops need for a stable and integrated set of tools synthetic view of results and analysis re-usability features user-defined and ready-to-use "pipelines" → skepticism towards complex products
What’s next ?
Introduction
Mobyle project
RPBS Mobyle portal
Functionalities
Users : service search/discovery service usage and documentation data and services integration workspace navigation
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