Read depth 1 2 3. 4. 3 2 1 gap width reference. SNP. Variant possible sequence error. Gigsaw created by Dr David Martin, University of Dundee, Scotland ...
Gigsaw Next Gen Sequence Assembly Simulator Print out the sequence reads and reference sequence sheets. Make sure that reads sheet 1 forward is on the back of the same sheet of paper as reads sheet 1 reverse and ensure that the reads align. Cut out the reads along the white horizontal gaps. &ŽƌƉĂŝƌĞĚĞŶĚƌĞĂĚƐ͕ĐĂƌĞĨƵůůLJĚŝǀŝĚĞƚŚĞŵĂƐƐŚŽǁŶŝŶƚŚĞĮŐƵƌĞďĞůŽǁ
The reference sequence can be assembled by using the grey box on the row end as a tab on which ƚŽƐƟĐŬƚŚĞƉƌĞǀŝŽƵƐƐĞƋƵĞŶĐĞƉŽƌƟŽŶ;ƉŽƐŝƟŽŶƐĂƌĞŶƵŵďĞƌĞĚĂďŽǀĞƚŚĞƐĞƋƵĞŶĐĞͿ͘
For a normal assembly, try to overlap the reads as much as possible. You should end up with approximately ƚŚĞƌĞĂĚĚĞƉƚŚŽĨƌĞĂĚƐĂƚĂůůƉŽŝŶƚƐŝŶƚŚĞĮŶĂůĂƐƐĞŵďůLJ͘ZĞŵĞŵďĞƌƚŚĂƚƚŚĞƌĞǀĞƌƐĞĐŽŵƉůĞŵĞŶƚƐĞƋƵĞŶĐĞ ;ƚŚĞŽƚŚĞƌƐƚƌĂŶĚŽĨEͿĐĂŶďĞĨŽƵŶĚŽŶƚŚĞƌĞǀĞƌƐĞƐŝĚĞ͘
Read depth 1 2 3 4 3 2 1 &ŽƌƉĂŝƌĞĚĞŶĚƌĞĂĚƐ͕ƉůĂĐĞƚŚĞŵĨĂĐŝŶŐĞĂĐŚŽƚŚĞƌĂƉƉƌŽdžŝŵĂƚĞůLJƚŚĞŐĂƉƐŝnjĞĂƉĂƌƚ͘ŐĂŝŶĂƩĞŵƉƚƚŽĂůŝŐŶ them as well as you can.
gap width
&ŽƌĂůŝŐŶŝŶŐĂŐĂŝŶƐƚƚŚĞƌĞĨĞƌĞŶĐĞƐĞƋƵĞŶĐĞ͕ƚƌLJƚŽĮŶĚƚŚĞƉŽƐŝƟŽŶǁŚĞƌĞƚŚĞƐĞƋƵĞŶĐĞďĞƐƚŵĂƚĐŚĞƐ͘/ĨLJŽƵĂƌĞ looking for SNPs or have a high error rate then there may not be a perfect match. SNP
Variant
possible sequence error
reference Gigsaw created by Dr David Martin, University of Dundee, Scotland
Gigsaw Parameters for Ben PLUS Sequence Length
92
Coverage
4.6
Error rate
10/1000 bases
Polymorphisms
Sequence contains 0 polymorphisms
Gigsaw created by Dr David Martin, University of Dundee, Scotland
Ben PLUS sheet 1 forward reads
G G G C A A G G T G A A C G T G G A T G A C C C C A C A G G G C A G T A A C G G C A G G T G A A C G T G G A T G A A G T T G G A C C A A C T T C A T C C A C G T T C A C G T T G G T G G T G A G G C C C T G G G C C T G A C T C C T G A G G A G A A G T C T A G A C T T C T C C T C A G G A G T C A G G G G C A A G G T G A A C G T G G A T G A C C T T G C C C C A C A G G G C A G T A A T C A C C A C C A A C T T C A T C C A C G C A A G G T G A A C G T G G A T G A A G T T G A G G A G A T G T C T G C C G T T A C G T G A A C G T G G A T G A A G T T G G T A C A A G G C A G T A A C G G C A G A C T C T G G T G C A T C T G A C T C C T G A G X A A T C T G A C T C C T G A G G A G A A G T C C A C A G G G C A G T A A C G G C A G A G C A G T A A C G G C A G A C T T C T C C C C A C G T T C A C C T T G C C C C A C A C T G A G G A G A A G T C T G C C G T T A Gigsaw created by Dr David Martin, University of Dundee, Scotland
Ben PLUS sheet 1 reverse reads
T C A T C C A C G T T C A C C T T G C C C T G C C G T T A C T G C C C T G T G G G G C C A A C T T C A T C C A C G T T C A C C G T G A A C G T G G A T G A A G T T G G T G C C C A G G G C C T C A C C A C C A A C A G A C T T C T C C T C A G G A G T C A G C T G A C T C C T G A G G A G A A G T C T T C A T C C A C G T T C A C C T T G C C C T T A C T G C C C T G T G G G G C A A G G C G T G G A T G A A G T T G G T G G T G A A C T T C A T C C A C G T T C A C C T T G G T A A C G G C A G A C A T C T C C T C A A C C A A C T T C A T C C A C G T T C A C A G T C T G C C G T T A C T G C C T T G T C T C A G G A G T C A G A T G C A C C A G A C T T C T C C T C A G G A G T C A G A T T C T G C C G T T A C T G C C C T G T G G G G A G A A G T C T G C C G T T A C T G C T G T G G G G C A A G G T G A A C G T G G T A A C G G C A G A C T T C T C C T C A G Gigsaw created by Dr David Martin, University of Dundee, Scotland
Gigsaw Next Gen Sequence Assembly Simulator ... Make sure that reads sheet 1 forward is on the back of the same sheet of paper as reads sheet 1 reverse and.
Are you looking for ben les plus belles PDF?. If you are areader who likes to download ben les plus belles Pdf to any kind of device,whether its your laptop, ...
Jun 3, 2010 - tion of related molecules has been linked with the emergence of .... a, Representation of the linear and circular forms of the EsV-1 genome.
live insects, bird excrement, and sweet food waste (10). That adult ants are able to live ... with honey water and cockroaches. ... DNase I before further treatment.
Activation of DNA cleavage may be regulated further by the topologically ... Active DNA synthesis during the second cell cycle accounts for the final .... through the first cell cycle, after several rounds of genome amplification .... catalytic subun
mites))3,4 (Supplementary Fig. ... 1Department of Biology, The University of Western Ontario, London N6A 5B7, .... RNA-seq data on matching samples (Supplementary Note 2.3). ..... The T. urticae and Acyrthosiphon pisum sequences form a.
genome, representing the first complete chelicerate genome. ... environment and organization of the Hox complex, and also reveals evolutionary innovation of silk production. ... Lower Devonian period (410 million years ago). ... Some mites are of maj
Oct 4, 2012 - inserted in non-coding sequences under the null hypothesis that IES ...... Plasterk RH, Izsvák Z, Ivics Z (1999) Resident aliens: the Tc1/mariner.
includes an early regulation of transcription-associated proteins, an intermediate repression ... The acute phase (AP) of the inflammatory response ..... of the small sample size. ..... Liver gene expression associated with diet and lesion develop-.
Oct 4, 2012 - Intragenic Parasitic DNA: Evolutionary Dynamics of ... This is an open-access article distributed under the terms of the Creative Commons ... Introduction ...... definition used here is necessarily a genomic definition involving.
nature. Essentially, the central dogma stated that the genomic sequence alone ... believed then those of us living today are directly linked to the very first life forms to ... To be sure it has evolved and increased in its complexity but it has its
such as transcription of the sequence into gene products or the replication cycle of the genome. ... Working from the bottom up we see that atoms combine into molecules, .... in the offspring as a global instability affecting all the cells in the new
the cpm plus | Read & Download Ebook the cpm plus for free at our Online Library. the cpm plus PDF eBook. THE CPM PLUS. THE CPM PLUS - Are you looking ...
PDF Subject: Qui Est Ben Carson La Version Courte Who Is Ben Carson The Short Version Its strongly recommended to start read the Intro section, next on the Quick Discussion and find out all the topic coverage within this PDF file one after the other.
from fruit fly (Drosophila melanogaster), yellow mealworm beetle (Tenebrio molitor), and house cricket (Acheta domestica) were also included in the staining run ...
reveals common, rare and novel functional deleterious ... disease in medullary sponge kidney and effect of ... Am Soc Nephrol 2009; 4: 1974â1979. 10. ... a particular phenotype is more likely to ... makeup of two other genes: non-muscle.
Institut Supérieur des Beaux Arts de Tunis. Résumé. Avec un double profil mixant marketing et nouvelles technologies, je conçois des stratégies ... Nana, Tena), Orange Côte d'ivoire, Rotary club, Akzonobel Tunisie, Radio IFM Tunisie,.
électriques dont le spectre est compris entre des limites ... les filtres pour lesquels le quadripôle n'est constitué que de composants. Définition : un filtre est un ...
&b44Û Û Û Û. Dm. 5fr. Swing! ŒÂ = Œ lj. Û Û Û Û. Bb7. 6fr. A7. 5fr. Û Û Û Û. Dm. 5fr. Û Û Û Û. Bb7. 6fr. A7. 5fr. &b n###. 5. Û Û Û Û. Dm. 5fr. Û Û Û Û. Bb7.