Oct 27, 2010 - Python file containing one main function. Process. Process ... Define a shared data organization. Reuse data from people who ... Data management toolbox : visualization, update, conversion, importation. Menu BrainVISA ->.
What is a process ? A process is an interface between BrainVISA and another software
Process BrainVISA
Process Process
Reusable component. For instance, a process can call other processes. Python file containing one main function
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Why using BrainVISA databases ? Define a shared data organization Reuse data from people who left the lab Share data with people from other labs Make links between data Eg. : Find the head mesh corresponding to this MRI scan
Automation of data processing
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What is a BrainVISA database ? What is a BrainVISA database ? A tree of directories containing data files that are organized in a hierarchy that follows an ontology A relational database built from an ontology and allowing to make efficient selection requests on data files.
Two ways of seeing the same data connected together by a common ontology bijection
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What is a BrainVISA ontology ? Hierarchy of types
Raw T1 MRI protocol subject acquisition normalization
Starting with BrainVISA Available for free download on http://brainvisa.info Linux, Windows XP, and MacOS versions
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First step : define a database A directory where all data written by BrainVISA will be stored. BrainVISA database is organized to store information in addition to the data files : protocol, subject, modality, acquisition, analysis... Data management toolbox : visualization, update, conversion, importation
Menu BrainVISA -> Preferences -> Databases -> Add
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Second step : Import data Import data to process in your BrainVISA database : select input data on the filesystem with and then enter information about data with . BrainVISA copy it in the database. Different importation processes exist according the type of data (T1 MRI, Diffusion MRI, fMRI...)
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Process data Select a process and open it (double click or open button) Enter input parameters by selecting them in the database using the button BrainVISA automatically complete as many parameters as possible. Output data will be written in the database. Data visualization with Iteration of a process on several data. Execution log : Menu BrainVISA -> Show log Pipeline : set of processes (serie, choices)
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Documentation and help Documentation and forum on the website : http://brainvisa.info/
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